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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3egt722Farnesyl pyrophosphate synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3egt722Farnesyl pyrophosphate synthase/1.000
3dyh721Farnesyl pyrophosphate synthase/0.736
3rywK9HFarnesyl pyrophosphate synthase, putative/0.550
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.524
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.514
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.499
4dwb0M7Farnesyl pyrophosphate synthase/0.497
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.492
3ez3IPEFarnesyl pyrophosphate synthase, putative/0.489
1zw5ZOLFarnesyl pyrophosphate synthase2.5.1.100.488
3krfIPEGeranyl diphosphate synthase large subunit/0.480
3krfDSTGeranyl diphosphate synthase large subunit/0.477
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.473
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.473
1rqjIPEFarnesyl diphosphate synthase2.5.1.100.466
1rqjRISFarnesyl diphosphate synthase2.5.1.100.464
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.461
3oabDSTGeranyl diphosphate synthase large subunit/0.454
4dxj0M9Farnesyl pyrophosphate synthase/0.452
4kqsRISFarnesyl pyrophosphate synthase2.5.1.100.449
3rbmB73Farnesyl pyrophosphate synthase, putative/0.447
2opnSUFFarnesyl pyrophosphate synthase2.5.1.100.445