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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ed1GA3Gibberellin receptor GID1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ed1GA3Gibberellin receptor GID1/1.000
3eblGA4Gibberellin receptor GID1/0.649
2zshGA3Gibberellin receptor GID1A30.611
2zsiGA4Gibberellin receptor GID1A30.568
3hk1B64Fatty acid-binding protein, adipocyte/0.483
2ejvNADL-threonine 3-dehydrogenase/0.473
3sptUD1Bifunctional protein GlmU/0.459
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.458
2g1n1IGRenin3.4.23.150.457
3elbC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.457
3d8vUD1Bifunctional protein GlmU/0.453
1fmjRTLRetinol dehydratase/0.447
3zhrTPPMultifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.447
3pce3HPProtocatechuate 3,4-dioxygenase alpha chain1.13.11.30.446
3pce3HPProtocatechuate 3,4-dioxygenase beta chain1.13.11.30.446
1u30GOXPancreatic alpha-amylase/0.445
2yxuATPPyridoxal kinase2.7.1.350.445
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.442
1eioGCHGastrotropin/0.441
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.441
3da24MDCarbonic anhydrase 134.2.1.10.441
3t4eNADQuinate/shikimate dehydrogenase/0.441
2aa3AP0L-lactate dehydrogenase/0.440
2nnqT4BFatty acid-binding protein, adipocyte/0.440
3qfcNAPNADPH--cytochrome P450 reductase/0.440