sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3e2s	FAD	Bifunctional protein PutA	1.5.5.2

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3e2s	FAD	Bifunctional protein PutA	1.5.5.2	1.000
1tj2	FAD	Bifunctional protein PutA	1.5.5.2	0.763
1tj1	FAD	Bifunctional protein PutA	1.5.5.2	0.745
4o8a	FAD	Bifunctional protein PutA	1.2.1.88	0.727
1tj0	FAD	Bifunctional protein PutA	1.5.5.2	0.649
2fzm	FAD	Bifunctional protein PutA	1.5.5.2	0.611
3haz	FAD	Bifunctional protein PutA	/	0.565
2fzn	FAD	Bifunctional protein PutA	1.5.5.2	0.541
4q73	FAD	Bifunctional protein PutA	/	0.478
4q71	FAD	Bifunctional protein PutA	/	0.468
4q72	FAD	Bifunctional protein PutA	/	0.459