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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dziRGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3dziRGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.61.000
3dzkNMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.639
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.613
2cv2GSUGlutamate--tRNA ligase6.1.1.170.496
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.451