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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dyh721Farnesyl pyrophosphate synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3dyh721Farnesyl pyrophosphate synthase/1.000
3egt722Farnesyl pyrophosphate synthase/0.707
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.530
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.511
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.511
3rywK9HFarnesyl pyrophosphate synthase, putative/0.504
3ez3IPEFarnesyl pyrophosphate synthase, putative/0.501
4dwb0M7Farnesyl pyrophosphate synthase/0.501
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.498
4dxj0M9Farnesyl pyrophosphate synthase/0.482
1zw5ZOLFarnesyl pyrophosphate synthase2.5.1.100.471
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.471
3krfIPEGeranyl diphosphate synthase large subunit/0.469
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.466
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.459
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.458
1yq7RISFarnesyl pyrophosphate synthase2.5.1.100.450
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.100.450
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.446
3rbmB73Farnesyl pyrophosphate synthase, putative/0.445
3krfDSTGeranyl diphosphate synthase large subunit/0.444
4kqsIPEFarnesyl pyrophosphate synthase2.5.1.100.444