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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dyaPZLGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3dyaPZLGag-Pol polyprotein2.7.7.491.000
3ffi3OBGag-Pol polyprotein2.7.7.490.575
4h4o506Gag-Pol polyprotein2.7.7.490.569
3c6tM14Gag-Pol polyprotein2.7.7.490.554
3drpR8EGag-Pol polyprotein2.7.7.490.551
4rw4494Gag-Pol polyprotein2.7.7.490.543
3dokGWJPol protein/0.538
3drrR8EGag-Pol polyprotein2.7.7.490.538
3t195MAGag-Pol polyprotein2.7.7.490.535
3lakKR1Gag-Pol polyprotein2.7.7.490.533
2be2R22Gag-Pol polyprotein2.7.7.490.527
2wonZZEGag-Pol polyprotein2.7.7.490.526
2ynhEURGag-Pol polyprotein2.7.7.490.525
3tamM06Gag-Pol polyprotein2.7.7.490.524
4mfb29TGag-Pol polyprotein2.7.7.490.523
3dlgGWEGag-Pol polyprotein2.7.7.490.503
2b5j3ACGag-Pol polyprotein2.7.7.490.498
3dolGWIPol protein/0.489
3dmjGWEPol protein/0.487
3e01PZ2Gag-Pol polyprotein2.7.7.490.475
2ynfWHUGag-Pol polyprotein2.7.7.490.468
1rt1MKCGag-Pol polyprotein2.7.7.490.458
3is9AC7Gag-Pol polyprotein2.7.7.490.453
1jlaTNKGag-Pol polyprotein2.7.7.490.450
3di6PDZGag-Pol polyprotein2.7.7.490.448
1rt2TNKGag-Pol polyprotein2.7.7.490.441
3lanKBTGag-Pol polyprotein2.7.7.490.441