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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3drpR8EGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3drpR8EGag-Pol polyprotein2.7.7.491.000
3c6uM22Gag-Pol polyprotein2.7.7.490.600
3t1a5MAGag-Pol polyprotein2.7.7.490.584
3dyaPZLGag-Pol polyprotein2.7.7.490.559
3lakKR1Gag-Pol polyprotein2.7.7.490.557
3tamM06Gag-Pol polyprotein2.7.7.490.554
4h4o506Gag-Pol polyprotein2.7.7.490.546
3t195MAGag-Pol polyprotein2.7.7.490.542
4h4m494Gag-Pol polyprotein2.7.7.490.539
3drrR8EGag-Pol polyprotein2.7.7.490.534
2ynfWHUGag-Pol polyprotein2.7.7.490.531
2be2R22Gag-Pol polyprotein2.7.7.490.525
4rw6494Gag-Pol polyprotein2.7.7.490.521
2wonZZEGag-Pol polyprotein2.7.7.490.518
4rw4494Gag-Pol polyprotein2.7.7.490.517
4mfb29TGag-Pol polyprotein2.7.7.490.514
3c6tM14Gag-Pol polyprotein2.7.7.490.502
3dlgGWEGag-Pol polyprotein2.7.7.490.498
3dokGWJPol protein/0.497
3dmjGWEPol protein/0.485
3ffi3OBGag-Pol polyprotein2.7.7.490.485
3dleGFAGag-Pol polyprotein2.7.7.490.481
3lalKRVGag-Pol polyprotein2.7.7.490.479
2b5j3ACGag-Pol polyprotein2.7.7.490.476
3e01PZ2Gag-Pol polyprotein2.7.7.490.466
2ynhEURGag-Pol polyprotein2.7.7.490.465
2jleI15Reverse transcriptase/RNaseH/0.454
4lsl1YQGag-Pol polyprotein2.7.7.490.452
1c1bGCAGag-Pol polyprotein2.7.7.490.444