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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dlgGWEGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3dlgGWEGag-Pol polyprotein2.7.7.491.000
3dmjGWEPol protein/0.602
3c6tM14Gag-Pol polyprotein2.7.7.490.542
3t195MAGag-Pol polyprotein2.7.7.490.509
4h4m494Gag-Pol polyprotein2.7.7.490.506
3dokGWJPol protein/0.500
2wonZZEGag-Pol polyprotein2.7.7.490.497
3drpR8EGag-Pol polyprotein2.7.7.490.494
4mfb29TGag-Pol polyprotein2.7.7.490.494
3dyaPZLGag-Pol polyprotein2.7.7.490.490
4h4o506Gag-Pol polyprotein2.7.7.490.487
2be2R22Gag-Pol polyprotein2.7.7.490.480
3t1a5MAGag-Pol polyprotein2.7.7.490.479
4rw6494Gag-Pol polyprotein2.7.7.490.479
3drrR8EGag-Pol polyprotein2.7.7.490.477
1jlaTNKGag-Pol polyprotein2.7.7.490.471
3lalKRVGag-Pol polyprotein2.7.7.490.471
3c6uM22Gag-Pol polyprotein2.7.7.490.468
3ffi3OBGag-Pol polyprotein2.7.7.490.460
4rw4494Gag-Pol polyprotein2.7.7.490.457
3lakKR1Gag-Pol polyprotein2.7.7.490.456
1rtiHEFGag-Pol polyprotein2.7.7.490.455
1rt1MKCGag-Pol polyprotein2.7.7.490.445
2b5j3ACGag-Pol polyprotein2.7.7.490.440