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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dleGFAGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3dleGFAGag-Pol polyprotein2.7.7.491.000
3dmjGWEPol protein/0.614
1c1bGCAGag-Pol polyprotein2.7.7.490.606
3is9AC7Gag-Pol polyprotein2.7.7.490.567
3ffi3OBGag-Pol polyprotein2.7.7.490.565
1klmSPPGag-Pol polyprotein2.7.7.490.560
4rw6494Gag-Pol polyprotein2.7.7.490.559
3t1a5MAGag-Pol polyprotein2.7.7.490.556
1rt1MKCGag-Pol polyprotein2.7.7.490.552
3irxUDRGag-Pol polyprotein2.7.7.490.547
4h4m494Gag-Pol polyprotein2.7.7.490.547
3dokGWJPol protein/0.546
3c6uM22Gag-Pol polyprotein2.7.7.490.539
3lalKRVGag-Pol polyprotein2.7.7.490.523
4mfb29TGag-Pol polyprotein2.7.7.490.522
3c6tM14Gag-Pol polyprotein2.7.7.490.519
4i7fNVEGag-Pol polyprotein2.7.7.490.518
1rt2TNKGag-Pol polyprotein2.7.7.490.515
3drpR8EGag-Pol polyprotein2.7.7.490.511
2be2R22Gag-Pol polyprotein2.7.7.490.507
3i0rRT3Gag-Pol polyprotein2.7.7.490.506
2ze2T27Gag-Pol polyprotein2.7.7.490.504
3i0sRT7Gag-Pol polyprotein2.7.7.490.501
3nbpJGZGag-Pol polyprotein2.7.7.490.500
4i2pG73Gag-Pol polyprotein2.7.7.490.500
3qlhT27Gag-Pol polyprotein2.7.7.490.497
4lsl1YQGag-Pol polyprotein2.7.7.490.496
3lanKBTGag-Pol polyprotein2.7.7.490.494
1tktH12Gag-Pol polyprotein2.7.7.490.490
1tvrTB9Gag-Pol polyprotein2.7.7.490.490
4rw4494Gag-Pol polyprotein2.7.7.490.490
2wonZZEGag-Pol polyprotein2.7.7.490.489
3lamKRPGag-Pol polyprotein2.7.7.490.489
4h4o506Gag-Pol polyprotein2.7.7.490.489
3t195MAGag-Pol polyprotein2.7.7.490.478
1rt7UC4Gag-Pol polyprotein2.7.7.490.473
3tamM06Gag-Pol polyprotein2.7.7.490.473
2rkiTT1Gag-Pol polyprotein2.7.7.490.472
3m8qDJZGag-Pol polyprotein2.7.7.490.472
2b5j3ACGag-Pol polyprotein2.7.7.490.469
2opsHBQGag-Pol polyprotein2.7.7.490.469
1c1c612Gag-Pol polyprotein2.7.7.490.468
3lakKR1Gag-Pol polyprotein2.7.7.490.465
2ynhEURGag-Pol polyprotein2.7.7.490.464
2zd1T27Gag-Pol polyprotein2.7.7.490.460
4ifvT27Gag-Pol polyprotein2.7.7.490.460
4id5T27Gag-Pol polyprotein2.7.7.490.459
1tl3H20Gag-Pol polyprotein2.7.7.490.458
2ban357Gag-Pol polyprotein2.7.7.490.453
1rt5UC2Gag-Pol polyprotein2.7.7.490.452
4g1qT27Gag-Pol polyprotein2.7.7.490.449
1tl1H18Gag-Pol polyprotein2.7.7.490.447
4uugPXGBranched-chain amino acid aminotransferase, putative/0.441