sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3djj | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3djj | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 1.000 | |
| 1gre | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.586 | |
| 3djg | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.581 | |
| 2rab | FAD | Glutathione amide reductase | / | 0.542 | |
| 2r9z | FAD | Glutathione amide reductase | / | 0.533 | |
| 4opg | FDA | Conserved Archaeal protein | / | 0.485 | |
| 1geu | FAD | Glutathione reductase | 1.8.1.7 | 0.480 | |
| 1x1c | SAH | C-20 methyltransferase | / | 0.468 | |
| 4opi | FDA | Conserved Archaeal protein | / | 0.464 | |
| 1kp3 | ATP | Argininosuccinate synthase | 6.3.4.5 | 0.457 | |
| 2qbu | SAH | Precorrin-2 methyltransferase | / | 0.456 | |
| 3tne | RIT | Candidapepsin-1 | 3.4.23.24 | 0.453 | |
| 3up4 | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.452 | |
| 3ziu | LSS | Leucyl-tRNA synthetase | / | 0.449 | |
| 1ges | FAD | Glutathione reductase | 1.8.1.7 | 0.447 | |
| 4bc7 | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.447 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.444 | |
| 2v7g | NAD | Urocanate hydratase | 4.2.1.49 | 0.444 | |
| 3uoy | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.444 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.443 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.442 | |
| 1qrp | HH0 | Pepsin A-4 | 3.4.23.1 | 0.442 | |
| 4f1l | 0RY | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.442 | |
| 3k5c | 0BI | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 3rpe | FAD | Putative modulator of drug activity | / | 0.440 |