sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3d2r	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3d2r	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	1.000
2zkj	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.597
1gjv	AGS	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	2.7.11.4	0.563
2e0a	ANP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.560
3crl	ANP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial	2.7.11.2	0.492
2zdy	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.476
1nhh	ANP	DNA mismatch repair protein MutL	/	0.443