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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d28B34Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3d28B34Genome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.513
3u4r08FGenome polyprotein2.7.7.480.509
3hkwIX6Genome polyprotein2.7.7.480.503
3ska053Genome polyprotein2.7.7.480.499
3u4o08EGenome polyprotein2.7.7.480.490
3d5m4MSGenome polyprotein2.7.7.480.479
3br9DEYGenome polyprotein2.7.7.480.467
4mkb28VGenome polyprotein2.7.7.480.467
2gc8885Polyprotein/0.450
3h59H59Genome polyprotein2.7.7.480.450
4mk728OGenome polyprotein2.7.7.480.445
3igvB80Genome polyprotein2.7.7.480.442
3gnvXNZGenome polyprotein2.7.7.480.441