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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cz09ODPheromone-binding protein ASP1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3cz09ODPheromone-binding protein ASP1/1.000
3cyz9ODPheromone-binding protein ASP1/0.770
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.482
4o701QKBromodomain-containing protein 4/0.481
1fmjRTLRetinol dehydratase/0.477
4j6cSTRCytochrome P450 monooxygenase/0.476
2y00Y01Beta-1 adrenergic receptor/0.475
4b4oNDPEpimerase family protein SDR39U1/0.475
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.474
3s79ASDAromatase1.14.14.140.473
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.473
4ia7BIVVitamin D3 receptor A/0.472
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.472
1og5SWFCytochrome P450 2C9/0.471
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.471
2znnS44Peroxisome proliferator-activated receptor alpha/0.471
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.471
4j6bPLOCytochrome P450 monooxygenase/0.471
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.470
3a1l2CCCytochrome P450/0.469
3vid4TTVascular endothelial growth factor receptor 22.7.10.10.469
1t88CAMCamphor 5-monooxygenase1.14.15.10.468
3cv9VDXVitamin D3 dihydroxylase/0.468
4uyf73BBromodomain-containing protein 2/0.468
1kkq471Peroxisome proliferator-activated receptor alpha/0.467
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.467
2uxuNARHTH-type transcriptional regulator TtgR/0.467
2y03Y01Beta-1 adrenergic receptor/0.467
1drbMTXDihydrofolate reductase1.5.1.30.466
1l2jETCEstrogen receptor beta/0.466
1wrlTFPTroponin C, slow skeletal and cardiac muscles/0.466
1zgaHMKIsoflavone 4'-O-methyltransferase/0.466
3bfb9ODPheromone-binding protein ASP1/0.466
6gswGPSGlutathione S-transferase Mu 12.5.1.180.466
1ml6GBXGlutathione S-transferase A22.5.1.180.465
2e9cB75Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.465
2uxiG50HTH-type transcriptional regulator TtgR/0.465
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.465
4ktkKTKCytochrome P450/0.465
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.465
3h18PMSEsterase/lipase/0.464
4g48PZBMycocyclosin synthase1.14.21.90.464
4hee14RPeroxisome proliferator-activated receptor gamma/0.464
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.464
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.463
3p3zP3ZPutative cytochrome P450/0.463
3sp6IL2Peroxisome proliferator-activated receptor alpha/0.463
2cppCAMCamphor 5-monooxygenase1.14.15.10.462
2hcdBIVVitamin D3 receptor A/0.462
3fwjCAMCamphor 5-monooxygenase1.14.15.10.462
4tuvCPZCytochrome P450 1191.140.462
4cd2FOLDihydrofolate reductase1.5.1.30.461
1xuoLA1Integrin alpha-L/0.460
2hw2RFPRifampin ADP-ribosyl transferase/0.460
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.460
2j14GNIPeroxisome proliferator-activated receptor delta/0.460
2om9AJAPeroxisome proliferator-activated receptor gamma/0.460
2po7CHDFerrochelatase, mitochondrial4.99.1.10.460
4g47TZFMycocyclosin synthase1.14.21.90.460
4ia1BIVVitamin D3 receptor A/0.460
4ia3BIVVitamin D3 receptor A/0.460
4l8u9AZSerum albumin/0.460
4ubsDIFPentalenic acid synthase1.14.15.110.460
1knuYPAPeroxisome proliferator-activated receptor gamma/0.459
1xddAAYIntegrin alpha-L/0.459
2jn3JN3Fatty acid-binding protein, liver/0.459
2uxoTACHTH-type transcriptional regulator TtgR/0.459
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.459
3t8xT8XT-cell surface glycoprotein CD1b/0.459
4g3jVNTLanosterol 14-alpha-demethylase/0.459
1iyzNDPProbable quinone oxidoreductase/0.458
1ppjSMACytochrome b/0.458
2hfpNSIPeroxisome proliferator-activated receptor gamma/0.458
2qd5CHDFerrochelatase, mitochondrial4.99.1.10.458
3v9v21LPeroxisome proliferator-activated receptor gamma/0.458
3zuxTCHTransporter/0.458
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.458
4j6dTESCytochrome P450 monooxygenase/0.458
4klrCHDFerrochelatase, mitochondrial4.99.1.10.458
4ktl1CQCytochrome P450/0.458
3uzcT4EAdenosine receptor A2a/0.458
1iwjCAMCamphor 5-monooxygenase1.14.15.10.457
2jedLG8Protein kinase C theta type2.7.11.130.457
3s1dZIRCytokinin dehydrogenase 11.5.99.120.457
3t3r9PLCytochrome P450 2A61.14.130.457
4ktf1TMCytochrome P450/0.457
2c7xNRBCytochrome P450 monooxygenase PikC/0.456
2nnhREACytochrome P450 2C8/0.456
2z3uCRRCytochrome P450/0.456
3vt9YI4Vitamin D3 receptor/0.456
4c9pCAMCytochrome P450/0.456
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.456
1rdt570Peroxisome proliferator-activated receptor gamma/0.455
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.455
2zbzVDXVitamin D3 dihydroxylase/0.455
3f5p741Insulin-like growth factor 1 receptor2.7.10.10.455
3r3b4CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.455
4ipw1G7Mycocyclosin synthase1.14.21.90.455
4iq71G9Mycocyclosin synthase1.14.21.90.455
4r20AERCytochrome P450 family 17 polypeptide 2/0.455
1fpqSAMIsoliquiritigenin 2'-O-methyltransferase/0.454
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
2m56CAMCamphor 5-monooxygenase1.14.15.10.454
2vn0TDZCytochrome P450 2C8/0.454
3h0aD30Peroxisome proliferator-activated receptor gamma/0.454
4iaq2GM5-hydroxytryptamine receptor 1B/0.454
4ict1EDMycocyclosin synthase1.14.21.90.454
4nc3ERM5-hydroxytryptamine receptor 2B/0.454
2npaMMBPeroxisome proliferator-activated receptor alpha/0.453
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.453
3abaFLICytochrome P450/0.453
3ibdCPZCytochrome P450 2B61.14.130.453
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.453
3mdmFJZCholesterol 24-hydroxylase/0.453
3mfrANPPeripheral plasma membrane protein CASK2.7.11.10.453
4klaCHDFerrochelatase, mitochondrial4.99.1.10.453
4l4aCAMCamphor 5-monooxygenase1.14.15.10.453
1lriCLRBeta-elicitin cryptogein/0.452
1phgMYTCamphor 5-monooxygenase1.14.15.10.452
1vrqFONSubunit alpha of sarocosine oxidase/0.452
2cig1DGDihydrofolate reductase1.5.1.30.452
2qbnCAMCamphor 5-monooxygenase1.14.15.10.452
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.452
3h0sB38Acetyl-CoA carboxylase/0.452
3icrFADCoenzyme A disulfide reductase/0.452
3ictCOACoenzyme A disulfide reductase/0.452
3zv64HBCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase1.3.1.560.452
4l4cCAMCamphor 5-monooxygenase1.14.15.10.452
1suoCPZCytochrome P450 2B41.14.14.10.451
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.451
2feuCAMCamphor 5-monooxygenase1.14.15.10.451
2gjlFMNNitronate monooxygenase1.13.12.160.451
4g7gVFVLanosterol 14-alpha-demethylase/0.451
4iarERM5-hydroxytryptamine receptor 1B/0.451
6cp4CAMCamphor 5-monooxygenase1.14.15.10.451
1gebCAMCamphor 5-monooxygenase1.14.15.10.450
1lsoNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.450
1x2hLPALipoate-protein ligase A6.3.1.200.450
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.450
2gtk208Peroxisome proliferator-activated receptor gamma/0.450
3d3eD3ECorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.450
3pgqGY3Acetyl-CoA carboxylase/0.450
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.450
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.450
4gh5NADShort-chain dehydrogenase/reductase SDR/0.450
4h3c0YZDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.450
5bp9SAHPutative methyltransferase protein/0.450
5ii2LU2Protein polybromo-1/0.450
1fp2HMOIsoflavone-7-O-methyltransferase 82.1.1.1500.449
1zhzERGOxysterol-binding protein homolog 4/0.449
2ejvNADL-threonine 3-dehydrogenase/0.449
2qblCAMCamphor 5-monooxygenase1.14.15.10.449
3bfa9ODOdorant binding protein ASP1/0.449
3dxjNE6DNA-directed RNA polymerase subunit beta/0.449
3dxjNE6DNA-directed RNA polymerase subunit beta'/0.449
3nr4PYVAbscisic acid receptor PYL2/0.449
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.449
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.449
1cbrREACellular retinoic acid-binding protein 1/0.448
1dz6CAMCamphor 5-monooxygenase1.14.15.10.448
1j3kNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.448
1jioDEB6-deoxyerythronolide B hydroxylase/0.448
2ca0PXICytochrome P450 monooxygenase PikC/0.448
2q5g1FAPeroxisome proliferator-activated receptor delta/0.448
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.448
4ejh0QACytochrome P450 2A131.14.14.10.448
4iui1GQEstrogen receptor/0.448
4jbtASDCytochrome P450 monooxygenase/0.448
4nb6444Nuclear receptor ROR-gamma/0.448
5br4NADLactaldehyde reductase1.1.1.770.448
3uzaT4GAdenosine receptor A2a/0.448
1k6pXN3Gag-Pol polyprotein3.4.23.160.447
3cppCAMCamphor 5-monooxygenase1.14.15.10.447
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.447
3tjsD0RCytochrome P450 3A4/0.447
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
4eevL1XHepatocyte growth factor receptor2.7.10.10.447
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.447
4g2gTDHMycocyclosin synthase1.14.21.90.447
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.447
1jipKTN6-deoxyerythronolide B hydroxylase/0.446
1osvCHCBile acid receptor/0.446
2q59240Peroxisome proliferator-activated receptor gamma/0.446
2q9fC3SCholesterol 24-hydroxylase/0.446
2z97CAMCamphor 5-monooxygenase1.14.15.10.446
3h0a9RARetinoic acid receptor RXR-alpha/0.446
3kljFADNADH-rubredoxin oxidoreductase1.18.1.10.446
3t2zFADSulfide-quinone reductase/0.446
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.446
3wd7COAAcridone synthase/0.446
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.446
4l4bCAMCamphor 5-monooxygenase1.14.15.10.446
4nr42LKCREB-binding protein/0.446
4qe6JN3Bile acid receptor/0.446
1eupASD6-deoxyerythronolide B hydroxylase/0.445
1fm4DXCMajor pollen allergen Bet v 1-L/0.445
1hosPHPGag-Pol polyprotein/0.445
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.445
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.445
2qaeFADDihydrolipoyl dehydrogenase1.8.1.40.445
3ajrNADNDP-sugar epimerase/0.445
3nwyGTPUridylate kinase/0.445
4jazSTLPeroxisome proliferator-activated receptor gamma/0.445
4xiwAZMCarbonic anhydrase, alpha type/0.445
5ai5BSUBifunctional epoxide hydrolase 23.1.3.760.445
1dkfBMSRetinoic acid receptor alpha/0.444
1lsjNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.444
1sozVAL_TYR_GLN_PHESerine endoprotease DegS3.4.21.1070.444
1t87CAMCamphor 5-monooxygenase1.14.15.10.444
1tg56454-hydroxyphenylpyruvate dioxygenase1.13.11.270.444
2j5xGSPADP-ribosylation factor 6/0.444
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.444
3pqbVGPPutative oxidoreductase/0.444
3tk3CPZCytochrome P450 2B41.14.14.10.444
3vt7VDXVitamin D3 receptor/0.444
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.444
4o4fATPKinase/0.444
5cp4CAMCamphor 5-monooxygenase1.14.15.10.444
1fm9570Peroxisome proliferator-activated receptor gamma/0.443
1y4lSVRBasic phospholipase A2 homolog 2/0.443
2fleAIProtease/0.443
2y01Y01Beta-1 adrenergic receptor/0.443
3gc9B45Mitogen-activated protein kinase 112.7.11.240.443
3l0lHC3Nuclear receptor ROR-gamma/0.443
3rasNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.443
3tmz06XCytochrome P450 2B41.14.14.10.443
4a83DXCMajor pollen allergen Bet v 1-A/0.443
4g3rCAMCamphor 5-monooxygenase1.14.15.10.443
4o761M3Bromodomain-containing protein 4/0.443
1uyrD1LAcetyl-CoA carboxylase/0.442
1zhwHC2Oxysterol-binding protein homolog 4/0.442
2uxpCLMHTH-type transcriptional regulator TtgR/0.442
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
3gc8B45Mitogen-activated protein kinase 112.7.11.240.442
3gobHXXDdmC/0.442
3t2kFADSulfide-quinone reductase/0.442
4b7dQLECytochrome P450 monooxygenase PikC/0.442
4c9oCAMCytochrome P450/0.442
4ejgNCTCytochrome P450 2A131.14.14.10.442
4jx1CAMCamphor 5-monooxygenase1.14.15.10.442
4oj4DIFPeroxisome proliferator-activated receptor gamma/0.442
5dq8FLFTranscriptional enhancer factor TEF-4/0.442
2a1nCAMCamphor 5-monooxygenase1.14.15.10.441
2aibERGBeta-elicitin cinnamomin/0.441
2w4iVGAGlutamate racemase/0.441
2yiuSMACytochrome b/0.441
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.441
3icrCOACoenzyme A disulfide reductase/0.441
3mg3ECHOrange carotenoid-binding protein/0.441
3p6nDSOCamphor 5-monooxygenase1.14.15.10.441
3tea4CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.441
3u8hBHPPhospholipase A2, membrane associated/0.441
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.441
3vn2TLSPeroxisome proliferator-activated receptor gamma/0.441
3vsoEK1Peroxisome proliferator-activated receptor gamma/0.441
4a9mP9MBromodomain-containing protein 2/0.441
4lxhC1EAlpha/beta hydrolase fold/0.441
4mcv29KProto-oncogene tyrosine-protein kinase Src2.7.10.20.441
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
4xldBRLPeroxisome proliferator-activated receptor gamma/0.441
4xumIMNPeroxisome proliferator-activated receptor gamma/0.441
5k2bZMAAdenosine receptor A2a/0.441
3rfmCFFAdenosine receptor A2a/0.441
1cd2FOLDihydrofolate reductase1.5.1.30.440
1t85CAMCamphor 5-monooxygenase1.14.15.10.440
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.440
2fxeDR7Gag-Pol polyprotein3.4.23.160.440
2jizANPATP synthase subunit beta, mitochondrial3.6.3.140.440
2zbaZBATrichothecene 3-O-acetyltransferase/0.440
3cgcFADCoenzyme A disulfide reductase/0.440
3lxiCAMCytochrome P450/0.440
3mdvCL6Cholesterol 24-hydroxylase/0.440
3r324CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.440
3t3q9PLCytochrome P450 2A61.14.130.440
3uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.440
3zkpERBErythromycin C-12 hydroxylase1.14.13.1540.440
4egnTWOCytochrome P450/0.440
4h9753SDihydrofolate reductase1.5.1.30.440
4l49CAMCamphor 5-monooxygenase1.14.15.10.440