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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cwj321Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cwj321Genome polyprotein2.7.7.481.000
3cdeN3HGenome polyprotein2.7.7.480.660
4ih71ERGenome polyprotein2.7.7.480.625
2giqNN2Genome polyprotein2.7.7.480.602
3tyvHI3Genome polyprotein2.7.7.480.588
2gc8885Polyprotein/0.587
3gynB42Genome polyprotein2.7.7.480.587
4ih61EPGenome polyprotein2.7.7.480.578
3h98B5PGenome polyprotein2.7.7.480.513
3d5m4MSGenome polyprotein2.7.7.480.503
3bsa1PDGenome polyprotein2.7.7.480.499
3h5uH5UGenome polyprotein2.7.7.480.495
2fvc888Polyprotein/0.489
3uph0C1Genome polyprotein2.7.7.480.485
3e51N35Genome polyprotein2.7.7.480.479
4mk728OGenome polyprotein2.7.7.480.474
4iz02BIGenome polyprotein2.7.7.480.471
3h5sH5SGenome polyprotein2.7.7.480.470
3golXNDGenome polyprotein2.7.7.480.469
3co93MSGenome polyprotein2.7.7.480.462
3csoXNIGenome polyprotein2.7.7.480.459
1z4uPH9Polyprotein/0.456
3upi0C2Genome polyprotein2.7.7.480.452
3g86T18Genome polyprotein2.7.7.480.451
4mk928RGenome polyprotein2.7.7.480.443
2yoj8Y6Genome polyprotein2.7.7.480.441
3d28B34Genome polyprotein2.7.7.480.441
3ske054Genome polyprotein2.7.7.480.441