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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cvkN34Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cvkN34Genome polyprotein2.7.7.481.000
3gnwXNCGenome polyprotein2.7.7.480.668
3h5sH5SGenome polyprotein2.7.7.480.637
3h5uH5UGenome polyprotein2.7.7.480.621
3d28B34Genome polyprotein2.7.7.480.617
2fvc888Polyprotein/0.608
3d5m4MSGenome polyprotein2.7.7.480.605
4ih71ERGenome polyprotein2.7.7.480.603
1z4uPH9Polyprotein/0.595
3h59H59Genome polyprotein2.7.7.480.593
3u4o08EGenome polyprotein2.7.7.480.584
3golXNDGenome polyprotein2.7.7.480.577
3upi0C2Genome polyprotein2.7.7.480.576
3ska053Genome polyprotein2.7.7.480.570
3h2lYAKGenome polyprotein2.7.7.480.567
3fqk79ZGenome polyprotein2.7.7.480.565
4ih61EPGenome polyprotein2.7.7.480.562
3hkyIX6Genome polyprotein2.7.7.480.559
4eaw0NQGenome polyprotein2.7.7.480.558
4mk728OGenome polyprotein2.7.7.480.558
4mk828QGenome polyprotein2.7.7.480.554
3cwj321Genome polyprotein2.7.7.480.542
3e51N35Genome polyprotein2.7.7.480.538
3co93MSGenome polyprotein2.7.7.480.537
3gnvXNZGenome polyprotein2.7.7.480.535
3h98B5PGenome polyprotein2.7.7.480.527
4iz02BIGenome polyprotein2.7.7.480.525
1yvfPH7Polyprotein/0.484
3qgd26SGenome polyprotein2.7.7.480.473
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.455
2qe5617Polyprotein/0.444
2zevIPEGeranylgeranyl pyrophosphate synthase/0.444
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.442