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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3coxFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3coxFADCholesterol oxidase1.1.3.61.000
1cc2FADCholesterol oxidase1.1.3.60.502
1mxtFAECholesterol oxidase1.1.3.60.492
1n4uFAECholesterol oxidase1.1.3.60.492
4u2lSFDCholesterol oxidase1.1.3.60.491
4u2sFDACholesterol oxidase1.1.3.60.480