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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3co93MSGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3co93MSGenome polyprotein2.7.7.481.000
2fvc888Polyprotein/0.630
3d5m4MSGenome polyprotein2.7.7.480.625
4mka2AYGenome polyprotein2.7.7.480.611
3u4r08FGenome polyprotein2.7.7.480.608
4mk728OGenome polyprotein2.7.7.480.605
3h5uH5UGenome polyprotein2.7.7.480.603
2yoj8Y6Genome polyprotein2.7.7.480.602
3uph0C1Genome polyprotein2.7.7.480.600
3hkyIX6Genome polyprotein2.7.7.480.599
3g86T18Genome polyprotein2.7.7.480.596
3tyvHI3Genome polyprotein2.7.7.480.596
3u4o08EGenome polyprotein2.7.7.480.596
4iz02BIGenome polyprotein2.7.7.480.591
4mk928RGenome polyprotein2.7.7.480.589
3e51N35Genome polyprotein2.7.7.480.587
4ih71ERGenome polyprotein2.7.7.480.585
2giqNN2Genome polyprotein2.7.7.480.581
3h59H59Genome polyprotein2.7.7.480.578
3igvB80Genome polyprotein2.7.7.480.578
3bsa1PDGenome polyprotein2.7.7.480.573
4eaw0NQGenome polyprotein2.7.7.480.573
3cwj321Genome polyprotein2.7.7.480.569
3h2lYAKGenome polyprotein2.7.7.480.568
3csoXNIGenome polyprotein2.7.7.480.567
3ska053Genome polyprotein2.7.7.480.565
3golXNDGenome polyprotein2.7.7.480.560
3d28B34Genome polyprotein2.7.7.480.555
3h5sH5SGenome polyprotein2.7.7.480.552
3gnvXNZGenome polyprotein2.7.7.480.551
3ske054Genome polyprotein2.7.7.480.551
3upi0C2Genome polyprotein2.7.7.480.549
4ih61EPGenome polyprotein2.7.7.480.548
3gnwXNCGenome polyprotein2.7.7.480.538
3cdeN3HGenome polyprotein2.7.7.480.531
3gynB42Genome polyprotein2.7.7.480.531
1z4uPH9Polyprotein/0.528
4mk828QGenome polyprotein2.7.7.480.528
3h98B5PGenome polyprotein2.7.7.480.525
1yvfPH7Polyprotein/0.498
3cvkN34Genome polyprotein2.7.7.480.496
2gc8885Polyprotein/0.493
3hkwIX6Genome polyprotein2.7.7.480.490
3fqk79ZGenome polyprotein2.7.7.480.466