Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cj3SX4Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cj3SX4Genome polyprotein2.7.7.481.000
4ju11NZGenome polyprotein2.7.7.480.554
2d3uCCTPolyprotein/0.537
4ju21O0Genome polyprotein2.7.7.480.531
4jvq1MLGenome polyprotein2.7.7.480.530
2girNN3Genome polyprotein2.7.7.480.515
4jtw1NUGenome polyprotein2.7.7.480.513
1nhv154Genome polyprotein2.7.7.480.506
2o5dVR1Genome polyprotein2.7.7.480.497
4jty1NVGenome polyprotein2.7.7.480.483
1d3gBREDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.452
4j6bPLOCytochrome P450 monooxygenase/0.447
4j6cSTRCytochrome P450 monooxygenase/0.445
4do30LAFatty-acid amide hydrolase 13.5.1.990.443
2ym1FADPhenylacetone monooxygenase1.14.13.920.441