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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cdeN3HGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cdeN3HGenome polyprotein2.7.7.481.000
4mkb28VGenome polyprotein2.7.7.480.584
3bsc2PDGenome polyprotein2.7.7.480.560
2giqNN2Genome polyprotein2.7.7.480.559
4ih61EPGenome polyprotein2.7.7.480.555
3tyvHI3Genome polyprotein2.7.7.480.552
3cwj321Genome polyprotein2.7.7.480.482
2gc8885Polyprotein/0.477