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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c6uM22Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3c6uM22Gag-Pol polyprotein2.7.7.491.000
3t1a5MAGag-Pol polyprotein2.7.7.490.708
2wonZZEGag-Pol polyprotein2.7.7.490.600
4h4m494Gag-Pol polyprotein2.7.7.490.593
3drpR8EGag-Pol polyprotein2.7.7.490.592
3lalKRVGag-Pol polyprotein2.7.7.490.586
4mfb29TGag-Pol polyprotein2.7.7.490.573
4h4o506Gag-Pol polyprotein2.7.7.490.568
3t195MAGag-Pol polyprotein2.7.7.490.566
4rw6494Gag-Pol polyprotein2.7.7.490.565
3c6tM14Gag-Pol polyprotein2.7.7.490.564
2be2R22Gag-Pol polyprotein2.7.7.490.544
2jleI15Reverse transcriptase/RNaseH/0.536
3dokGWJPol protein/0.526
3lakKR1Gag-Pol polyprotein2.7.7.490.526
4rw4494Gag-Pol polyprotein2.7.7.490.521
3dmjGWEPol protein/0.515
2ynhEURGag-Pol polyprotein2.7.7.490.514
1c1bGCAGag-Pol polyprotein2.7.7.490.500
3dleGFAGag-Pol polyprotein2.7.7.490.497
2b5j3ACGag-Pol polyprotein2.7.7.490.496
4lsl1YQGag-Pol polyprotein2.7.7.490.496
3tamM06Gag-Pol polyprotein2.7.7.490.490
1rt1MKCGag-Pol polyprotein2.7.7.490.488
3e01PZ2Gag-Pol polyprotein2.7.7.490.481
3dlgGWEGag-Pol polyprotein2.7.7.490.480
1klmSPPGag-Pol polyprotein2.7.7.490.476
3qlhT27Gag-Pol polyprotein2.7.7.490.474
3nbpJGZGag-Pol polyprotein2.7.7.490.473
2ze2T27Gag-Pol polyprotein2.7.7.490.472
3is9AC7Gag-Pol polyprotein2.7.7.490.470
1tktH12Gag-Pol polyprotein2.7.7.490.460
3bgrT27Gag-Pol polyprotein2.7.7.490.459
3m8qDJZGag-Pol polyprotein2.7.7.490.457
4i2pG73Gag-Pol polyprotein2.7.7.490.451
3lanKBTGag-Pol polyprotein2.7.7.490.440