sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bv7 | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3bv7 | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 1.000 | |
| 3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.747 | |
| 3dop | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.717 | |
| 3g1r | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.696 | |
| 3buv | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.682 | |
| 3caq | NDP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.544 | |
| 4jtq | NAP | Aldo-keto reductase family 1 member C2 | / | 0.505 | |
| 2hdj | NDP | Aldo-keto reductase family 1 member C2 | / | 0.503 | |
| 4jq3 | NAP | Aldo-keto reductase family 1 member C2 | / | 0.486 | |
| 4xo7 | NAP | Aldo-keto reductase family 1 member C2 | / | 0.477 | |
| 3h7r | NAP | Aldo-keto reductase family 4 member C8 | / | 0.476 | |
| 4l1x | NAP | Aldo-keto reductase family 1 member C2 | / | 0.461 | |
| 1s1r | NAP | Aldo-keto reductase family 1 member C3 | / | 0.457 | |
| 2fvl | NAP | Aldo-keto reductase family 1 member C4 | 1.1.1.225 | 0.456 | |
| 1q5m | NDP | Prostaglandin-E(2) 9-reductase | 1.1.1.189 | 0.452 | |
| 2hej | NDP | Aldo-keto reductase family 1 member C21 | 1.1.1 | 0.447 | |
| 2p5n | NDP | Aldo-keto reductase family 1 member C21 | 1.1.1 | 0.444 | |
| 4dz5 | NAP | Aldo-keto reductase family 1 member C3 | / | 0.443 |