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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bsa1PDGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3bsa1PDGenome polyprotein2.7.7.481.000
3d28B34Genome polyprotein2.7.7.480.596
3d5m4MSGenome polyprotein2.7.7.480.594
3upi0C2Genome polyprotein2.7.7.480.589
3e51N35Genome polyprotein2.7.7.480.588
3h59H59Genome polyprotein2.7.7.480.580
4mk928RGenome polyprotein2.7.7.480.575
3gnwXNCGenome polyprotein2.7.7.480.558
1z4uPH9Polyprotein/0.557
4eaw0NQGenome polyprotein2.7.7.480.557
4mk828QGenome polyprotein2.7.7.480.553
3ska053Genome polyprotein2.7.7.480.551
4mk728OGenome polyprotein2.7.7.480.549
3gnvXNZGenome polyprotein2.7.7.480.544
3h2lYAKGenome polyprotein2.7.7.480.528
1yvfPH7Polyprotein/0.515
3h5uH5UGenome polyprotein2.7.7.480.491
4ih71ERGenome polyprotein2.7.7.480.491
4iz02BIGenome polyprotein2.7.7.480.491
3g86T18Genome polyprotein2.7.7.480.482
2fvc888Polyprotein/0.477
3cwj321Genome polyprotein2.7.7.480.472
3co93MSGenome polyprotein2.7.7.480.468
3h5sH5SGenome polyprotein2.7.7.480.468
3uph0C1Genome polyprotein2.7.7.480.448