sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bi2 | FAD | Polyamine oxidase FMS1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3bi2 | FAD | Polyamine oxidase FMS1 | / | 1.000 | |
| 3cnd | FAD | Polyamine oxidase FMS1 | / | 0.603 | |
| 4gdp | FAD | Polyamine oxidase FMS1 | / | 0.598 | |
| 3bi5 | FAD | Polyamine oxidase FMS1 | / | 0.597 | |
| 1rsg | FAD | Polyamine oxidase FMS1 | / | 0.558 | |
| 2uxx | FAJ | Lysine-specific histone demethylase 1A | 1 | 0.482 | |
| 2dw4 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.458 | |
| 2iw5 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.457 | |
| 4xbf | FAD | Lysine-specific histone demethylase 1A | 1 | 0.452 | |
| 2hko | FAD | Lysine-specific histone demethylase 1A | 1 | 0.450 | |
| 4ech | FAD | Polyamine oxidase FMS1 | / | 0.443 | |
| 4guu | FA9 | Lysine-specific histone demethylase 1B | 1 | 0.443 | |
| 3cn8 | FAD | Polyamine oxidase FMS1 | / | 0.442 |