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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bgvSAHmRNA cap guanine-N7 methyltransferase2.1.1.56

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3bgvSAHmRNA cap guanine-N7 methyltransferase2.1.1.561.000
5e8jSAHmRNA cap guanine-N7 methyltransferase2.1.1.560.569
5je2SAHMethyl transferase/0.522
5je3SAHMethyl transferase/0.516
3eppSFGmRNA cap guanine-N7 methyltransferase2.1.1.560.488
5bp9SAHPutative methyltransferase protein/0.488
1ri2GTGmRNA cap guanine-N7 methyltransferase2.1.1.560.482
3uj8SFGPhosphoethanolamine N-methyltransferase/0.481
2xvmSAHTellurite methyltransferase2.1.1.2650.474
5je4SAHMethyl transferase/0.471
4r6xSAHPhosphoethanolamine N-methyltransferase/0.461
4qtuSAM18S rRNA (guanine(1575)-N(7))-methyltransferase/0.458
3p9kSAHCaffeic acid O-methyltransferase/0.456
4mwzSAMPhosphoethanolamine N-methyltransferase, putative/0.446
1nbiSAMGlycine N-methyltransferase2.1.1.200.445
3ssoSAHMycinamicin VI 2''-O-methyltransferase/0.443
3uj7SAMPhosphoethanolamine N-methyltransferase/0.442
2aouCQAHistamine N-methyltransferase2.1.1.80.441
4gi2NAPCrotonyl-CoA carboxylase/reductase/0.441
4rtlSFGDNA adenine methylase2.1.1.720.441