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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b82NADExotoxin A2.4.2.36

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3b82NADExotoxin A2.4.2.361.000
2zitNADExotoxin A2.4.2.360.559
3b8hNADExotoxin A2.4.2.360.548
3b78NADExotoxin A2.4.2.360.540
1xk9P34Exotoxin A2.4.2.360.501
1zm4TADExotoxin A2.4.2.360.479
4tjy3GNTankyrase-22.4.2.300.472
4bj9UHBTankyrase-22.4.2.300.466
4pnmNU1Tankyrase-22.4.2.300.459
4gv25MEPoly [ADP-ribose] polymerase 32.4.2.300.452
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.442
5ds309LPoly [ADP-ribose] polymerase 12.4.2.300.441
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.440