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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b6dFAECholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3b6dFAECholesterol oxidase1.1.3.61.000
4xwrFADCholesterol oxidase1.1.3.60.835
4xxgFADCholesterol oxidase1.1.3.60.831
1b8sFADCholesterol oxidase1.1.3.60.796
1n4wFADCholesterol oxidase1.1.3.60.783
1ijhFADCholesterol oxidase1.1.3.60.775
1n1pFADCholesterol oxidase1.1.3.60.774
4rekFADCholesterol oxidase1.1.3.60.768
1n4vFADCholesterol oxidase1.1.3.60.755
3gyjFADCholesterol oxidase1.1.3.60.739
3gyiFADCholesterol oxidase1.1.3.60.704
1b4vFADCholesterol oxidase1.1.3.60.700
4u2tFADCholesterol oxidase1.1.3.60.652
2gewFADCholesterol oxidase1.1.3.60.651
3cnjFADCholesterol oxidase1.1.3.60.596