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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b04OOPIsopentenyl-diphosphate delta-isomerase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3b04OOPIsopentenyl-diphosphate delta-isomerase/1.000
3b03VNRIsopentenyl-diphosphate delta-isomerase/0.493
3vkjFNRIsopentenyl-diphosphate delta-isomerase/0.473
3b05IPEIsopentenyl-diphosphate delta-isomerase/0.468
2zrzFNRIsopentenyl-diphosphate delta-isomerase/0.453
2zrvFNRIsopentenyl-diphosphate delta-isomerase/0.450
2zrxFMNIsopentenyl-diphosphate delta-isomerase/0.450