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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3awhFMNFMN-binding protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3awhFMNFMN-binding protein/1.000
3vy2FMNFMN-binding protein/0.655
1flmFMNFMN-binding protein/0.616
3a6rFMNFMN-binding protein/0.566
3a6qFMNFMN-binding protein/0.555
3a20FMNFMN-binding protein/0.553
3vy5FMNFMN-binding protein/0.539
2e83FMNFMN-binding protein/0.537
3amfFMNFMN-binding protein/0.513
4tuvCPZCytochrome P450 1191.140.449
1wliFMNFMN-binding protein/0.443
1pkfEPDEpothilone C/D epoxidase1.140.442