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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3af1GDPPantothenate kinase2.7.1.33

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3af1GDPPantothenate kinase2.7.1.331.000
3af0GDPPantothenate kinase2.7.1.330.653
3af4GCPPantothenate kinase2.7.1.330.625
2zs9ADPPantothenate kinase2.7.1.330.600
2getCOKPantothenate kinase2.7.1.330.569
2gevCOKPantothenate kinase2.7.1.330.564
2zsbADPPantothenate kinase2.7.1.330.560
3af2ACPPantothenate kinase2.7.1.330.548
3aezGDPPantothenate kinase2.7.1.330.541
2zsaADPPantothenate kinase2.7.1.330.526
3af3GCPPantothenate kinase2.7.1.330.526
2zs8ADPPantothenate kinase2.7.1.330.523
2zsdCOAPantothenate kinase2.7.1.330.517
2gesCOKPantothenate kinase2.7.1.330.495
4bfsZVSPantothenate kinase2.7.1.330.479
4bfvZVVPantothenate kinase2.7.1.330.476
4bfwZVWPantothenate kinase2.7.1.330.475
2geuCOKPantothenate kinase2.7.1.330.468
4bftZVTPantothenate kinase2.7.1.330.441
4bfxZVXPantothenate kinase2.7.1.330.441