sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3af0	GDP	Pantothenate kinase	2.7.1.33

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3af0	GDP	Pantothenate kinase	2.7.1.33	1.000
3af1	GDP	Pantothenate kinase	2.7.1.33	0.613
2zs9	ADP	Pantothenate kinase	2.7.1.33	0.582
2zsb	ADP	Pantothenate kinase	2.7.1.33	0.554
2zsd	COA	Pantothenate kinase	2.7.1.33	0.530
2zs8	ADP	Pantothenate kinase	2.7.1.33	0.526
3aez	GDP	Pantothenate kinase	2.7.1.33	0.523
2zsa	ADP	Pantothenate kinase	2.7.1.33	0.520
3af4	GCP	Pantothenate kinase	2.7.1.33	0.520
3af2	ACP	Pantothenate kinase	2.7.1.33	0.519
2get	COK	Pantothenate kinase	2.7.1.33	0.514
3af3	GCP	Pantothenate kinase	2.7.1.33	0.514
2gev	COK	Pantothenate kinase	2.7.1.33	0.508
2ges	COK	Pantothenate kinase	2.7.1.33	0.492
4bfw	ZVW	Pantothenate kinase	2.7.1.33	0.464