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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3a5oATPMajor actin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3a5oATPMajor actin/1.000
1nmdATPMajor actin/0.563
4pkiATPActin, alpha skeletal muscle/0.562
1c0fATPMajor actin/0.553
1kxpATPActin, alpha skeletal muscle/0.553
3mn6ATPActin-5C/0.551
1nm1ATPMajor actin/0.550
3m6gATPActin, alpha skeletal muscle/0.550
4k42ADPActin, alpha skeletal muscle/0.536
2q36ATPActin, alpha skeletal muscle/0.535
1mduATPActin, alpha skeletal muscle/0.529
1lotATPActin, alpha skeletal muscle/0.523
1rgiATPActin, alpha skeletal muscle/0.523
3m1fATPActin, alpha skeletal muscle/0.519
3u9dATPActin, alpha skeletal muscle/0.514
2a41ATPActin, alpha skeletal muscle/0.511
3mn9ATPActin-5C/0.511
4pkhADPActin, alpha skeletal muscle/0.511
3tu5ATPActin, alpha skeletal muscle/0.510
4pl8ATPActin, alpha skeletal muscle/0.507
4pkgATPActin, alpha skeletal muscle/0.505
1h1vATPActin, alpha skeletal muscle/0.503
1ijjATPActin, alpha skeletal muscle/0.503
5ce3ATPActin/0.501
3ffkATPActin, alpha skeletal muscle/0.497
4jhdANPActin-5C/0.491
3w3dATPActin, gamma-enteric smooth muscle/0.481
2v51ATPActin, alpha skeletal muscle/0.478
3u4lATPActin, cytoplasmic 1/0.476
4m63ATPActin-5C/0.469
1dejATPMajor actin/0.462
2q97ATPActin, alpha skeletal muscle/0.459
1nlvATPMajor actin/0.446