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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zx9ZX9Alpha-L-fucosidase, putative

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2zx9ZX9Alpha-L-fucosidase, putative/1.000
2zx6ZX6Alpha-L-fucosidase, putative/0.809
2zxbZXBAlpha-L-fucosidase, putative/0.795
2zx5ZX5Alpha-L-fucosidase, putative/0.707
2zx8ZX8Alpha-L-fucosidase, putative/0.661
2zx7ZX7Alpha-L-fucosidase, putative/0.656
4nj32KDCyclin-dependent kinase 22.7.11.220.466
2exlGDMEndoplasmin/0.459
4jhz1KVBeta-glucuronidase3.2.1.310.449