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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zscBTNTamavidin2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2zscBTNTamavidin2/1.000
1swnBTNStreptavidin/0.559
1sweBTNStreptavidin/0.555
1mepBTNStreptavidin/0.536
1swpBTQStreptavidin/0.534
1swpBTNStreptavidin/0.526
1n43BTNStreptavidin/0.525
1n9mBTNStreptavidin/0.517
1swdBTNStreptavidin/0.512
4yvbBTNStreptavidin/0.504
4bj8BTNAvidin/0.500
4gd9BTNStreptavidin/0.477
1nqmBTNStreptavidin/0.473
1swrBTNStreptavidin/0.467
3vhmNPKAvidin/0.446