sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2zsa	ADP	Pantothenate kinase	2.7.1.33

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2zsa	ADP	Pantothenate kinase	2.7.1.33	1.000
3aez	GDP	Pantothenate kinase	2.7.1.33	0.616
2zsb	ADP	Pantothenate kinase	2.7.1.33	0.529
2zs9	ADP	Pantothenate kinase	2.7.1.33	0.520
2ges	COK	Pantothenate kinase	2.7.1.33	0.519
3af2	ACP	Pantothenate kinase	2.7.1.33	0.509
3af3	GCP	Pantothenate kinase	2.7.1.33	0.505
3af0	GDP	Pantothenate kinase	2.7.1.33	0.503
3af4	GCP	Pantothenate kinase	2.7.1.33	0.497
2get	COK	Pantothenate kinase	2.7.1.33	0.492
2zsd	COA	Pantothenate kinase	2.7.1.33	0.489
3af1	GDP	Pantothenate kinase	2.7.1.33	0.474
4bfs	ZVS	Pantothenate kinase	2.7.1.33	0.472
2zs8	ADP	Pantothenate kinase	2.7.1.33	0.467
2geu	COK	Pantothenate kinase	2.7.1.33	0.466
2gev	COK	Pantothenate kinase	2.7.1.33	0.458