sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2zs9	ADP	Pantothenate kinase	2.7.1.33

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2zs9	ADP	Pantothenate kinase	2.7.1.33	1.000
3af0	GDP	Pantothenate kinase	2.7.1.33	0.594
3af1	GDP	Pantothenate kinase	2.7.1.33	0.564
2zsa	ADP	Pantothenate kinase	2.7.1.33	0.552
2zsb	ADP	Pantothenate kinase	2.7.1.33	0.548
3aez	GDP	Pantothenate kinase	2.7.1.33	0.540
2zsd	COA	Pantothenate kinase	2.7.1.33	0.524
2get	COK	Pantothenate kinase	2.7.1.33	0.521
3af4	GCP	Pantothenate kinase	2.7.1.33	0.520
2zs8	ADP	Pantothenate kinase	2.7.1.33	0.513
3af2	ACP	Pantothenate kinase	2.7.1.33	0.503
3af3	GCP	Pantothenate kinase	2.7.1.33	0.503
2ges	COK	Pantothenate kinase	2.7.1.33	0.497
2gev	COK	Pantothenate kinase	2.7.1.33	0.486
4bfs	ZVS	Pantothenate kinase	2.7.1.33	0.460
4bfw	ZVW	Pantothenate kinase	2.7.1.33	0.451