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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2znoS44Peroxisome proliferator-activated receptor gamma

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2znoS44Peroxisome proliferator-activated receptor gamma/1.000
1knuYPAPeroxisome proliferator-activated receptor gamma/0.563
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.552
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.549
1nyxDRFPeroxisome proliferator-activated receptor gamma/0.539
2pobGW4Peroxisome proliferator-activated receptor gamma/0.531
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.525
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.515
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.512
3vsoEK1Peroxisome proliferator-activated receptor gamma/0.508
1fm9570Peroxisome proliferator-activated receptor gamma/0.493
1zeoC01Peroxisome proliferator-activated receptor gamma/0.483
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.477
2om9AJAPeroxisome proliferator-activated receptor gamma/0.477
3vspEK8Peroxisome proliferator-activated receptor gamma/0.471
1rdt570Peroxisome proliferator-activated receptor gamma/0.470
4jazSTLPeroxisome proliferator-activated receptor gamma/0.470
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.457
1zgyBRLPeroxisome proliferator-activated receptor gamma/0.456
2q8sL92Peroxisome proliferator-activated receptor gamma/0.456
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.448