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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zjwREFCasein kinase II subunit alpha2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2zjwREFCasein kinase II subunit alpha2.7.11.11.000
4grb0XGCasein kinase II subunit alpha2.7.11.10.473
3q9xEMOCasein kinase II subunit alpha2.7.11.10.462
3ofm4B0Casein kinase II subunit alpha'2.7.11.10.461
3u4uLNHCasein kinase II subunit alpha2.7.11.10.459
3pe2E1BCasein kinase II subunit alpha2.7.11.10.458
4anmWULCasein kinase II subunit alpha2.7.11.10.454
3be9P04Casein kinase II subunit alpha2.7.11.10.441