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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ze2T27Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ze2T27Gag-Pol polyprotein2.7.7.491.000
4i2pG73Gag-Pol polyprotein2.7.7.490.529
3qlhT27Gag-Pol polyprotein2.7.7.490.509
4i2q1BTGag-Pol polyprotein2.7.7.490.508
2zd1T27Gag-Pol polyprotein2.7.7.490.507
3ffi3OBGag-Pol polyprotein2.7.7.490.507
1c1bGCAGag-Pol polyprotein2.7.7.490.506
3is9AC7Gag-Pol polyprotein2.7.7.490.505
4id5T27Gag-Pol polyprotein2.7.7.490.503
3med65BGag-Pol polyprotein2.7.7.490.501
3m8qDJZGag-Pol polyprotein2.7.7.490.491
3irxUDRGag-Pol polyprotein2.7.7.490.487
4ifvT27Gag-Pol polyprotein2.7.7.490.486
3nbpJGZGag-Pol polyprotein2.7.7.490.480
1tktH12Gag-Pol polyprotein2.7.7.490.476
1hpzAAPGag-Pol polyprotein2.7.7.490.470
3i0rRT3Gag-Pol polyprotein2.7.7.490.468
3m8p65BGag-Pol polyprotein2.7.7.490.464
1tl1H18Gag-Pol polyprotein2.7.7.490.461
3bgrT27Gag-Pol polyprotein2.7.7.490.459
3lanKBTGag-Pol polyprotein2.7.7.490.448
3t1a5MAGag-Pol polyprotein2.7.7.490.448
1tl3H20Gag-Pol polyprotein2.7.7.490.446
4i7fNVEGag-Pol polyprotein2.7.7.490.444
1tvrTB9Gag-Pol polyprotein2.7.7.490.441