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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z1qFADAcyl-CoA dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2z1qFADAcyl-CoA dehydrogenase/1.000
3owaFADAcyl-CoA dehydrogenase/0.501
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.453
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.452
3nf4FADAcyl-CoA dehydrogenase domain-containing protein/0.446
3r7kFDAProbable acyl CoA dehydrogenase/0.442