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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yxuATPPyridoxal kinase2.7.1.35

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yxuATPPyridoxal kinase2.7.1.351.000
3fhyATPPyridoxal kinase2.7.1.350.648
3keuATPPyridoxal kinase2.7.1.350.592
4en4ATPPyridoxal kinase2.7.1.350.531
1rfvADPPyridoxal kinase2.7.1.350.485