sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2yne	NHW	Glycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2yne	NHW	Glycylpeptide N-tetradecanoyltransferase	/	1.000
4b12	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.692
4b14	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.640
4b10	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.607
4cgp	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.551
5ag7	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.544
4b13	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.543
5a27	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.541
4a32	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.534
4a2z	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.526
4a30	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.524
4c2x	NHW	Glycylpeptide N-tetradecanoyltransferase 2	/	0.509
5ag6	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.487
4a95	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.465
4bbh	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.461
4b11	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.446