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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yncYNCGlycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yncYNCGlycylpeptide N-tetradecanoyltransferase/1.000
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.703
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.655
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.635
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.628
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.624
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.624
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.607
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.577
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.567
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.557
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.553
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.538
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.529
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/0.517
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.503
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.501
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/0.467