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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ym2FADPhenylacetone monooxygenase1.14.13.92

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ym2FADPhenylacetone monooxygenase1.14.13.921.000
2ylrFADPhenylacetone monooxygenase1.14.13.920.611
2ylxFADPhenylacetone monooxygenase1.14.13.920.609
4d03FADPhenylacetone monooxygenase1.14.13.920.607
4d04FADPhenylacetone monooxygenase1.14.13.920.572
2yltFADPhenylacetone monooxygenase1.14.13.920.571
2ylzFADPhenylacetone monooxygenase1.14.13.920.523
2ylsFADPhenylacetone monooxygenase1.14.13.920.522
1w4xFADPhenylacetone monooxygenase1.14.13.920.514
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.482
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.466
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.457
1xddAAYIntegrin alpha-L/0.448