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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ylrFADPhenylacetone monooxygenase1.14.13.92

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ylrFADPhenylacetone monooxygenase1.14.13.921.000
2yltFADPhenylacetone monooxygenase1.14.13.920.623
4d04FADPhenylacetone monooxygenase1.14.13.920.608
2ylwFADPhenylacetone monooxygenase1.14.13.920.589
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.528
4d03FADPhenylacetone monooxygenase1.14.13.920.495
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.451
2ylxFADPhenylacetone monooxygenase1.14.13.920.443