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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yiuSMACytochrome b

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yiuSMACytochrome b/1.000
2qjpSMACytochrome b/0.630
2qjySMACytochrome b/0.621
3cxhSMACytochrome b/0.612
3cx5SMACytochrome b/0.585
1kyoSMACytochrome b/0.577
2ibzSMACytochrome b/0.558
1ezvSMACytochrome b/0.556
1kb9SMACytochrome b/0.548
1ppjSMACytochrome b/0.515
1pp9SMACytochrome b/0.486
3tguWF3Cytochrome b/0.465
3abaFLICytochrome P450/0.462
3nalDBKCalcium-transporting ATPase/0.449
3dl9V2HVitamin D 25-hydroxylase/0.444