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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yac937Serine/threonine-protein kinase PLK12.7.11.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yac937Serine/threonine-protein kinase PLK12.7.11.211.000
4a4l939Serine/threonine-protein kinase PLK12.7.11.210.601
2rkuR78Serine/threonine-protein kinase PLK12.7.11.210.579
4b6l9ZPSerine/threonine-protein kinase PLK32.7.11.210.569
2owb626Serine/threonine-protein kinase PLK12.7.11.210.563
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.557
4j521J3Serine/threonine-protein kinase PLK12.7.11.210.544
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.525
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.511
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.500
2z2w770Wee1-like protein kinase2.7.10.20.492
2xkeWI2Serine/threonine-protein kinase Nek22.7.11.10.488
2in6839Wee1-like protein kinase2.7.10.20.479
2io6330Wee1-like protein kinase2.7.10.20.463
3biz61EWee1-like protein kinase2.7.10.20.453
1x8b824Wee1-like protein kinase2.7.10.20.441
3cr0809Wee1-like protein kinase2.7.10.20.440