sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2xvw | 9NR | Serum albumin |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2xvw | 9NR | Serum albumin | / | 1.000 | |
| 2xvv | 9DN | Serum albumin | / | 0.806 | |
| 3b9l | AZZ | Serum albumin | / | 0.686 | |
| 2bxq | IMN | Serum albumin | / | 0.628 | |
| 2bxm | IMN | Serum albumin | / | 0.611 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.466 | |
| 4iah | 1DX | Alr2278 protein | / | 0.454 | |
| 4f4d | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.453 | |
| 2hrc | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.447 | |
| 2po7 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.446 | |
| 4iae | 1DX | Alr2278 protein | / | 0.444 | |
| 3vt7 | VDX | Vitamin D3 receptor | / | 0.442 | |
| 3l6j | Z90 | Alr2278 protein | / | 0.440 |