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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xkeWI2Serine/threonine-protein kinase Nek22.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2xkeWI2Serine/threonine-protein kinase Nek22.7.11.11.000
2wqoVGKSerine/threonine-protein kinase Nek22.7.11.10.634
2yac937Serine/threonine-protein kinase PLK12.7.11.210.600
2xkfBX1Serine/threonine-protein kinase Nek22.7.11.10.596
2xkdT3MSerine/threonine-protein kinase Nek22.7.11.10.591
4a4xJUPSerine/threonine-protein kinase Nek22.7.11.10.552
2z2w770Wee1-like protein kinase2.7.10.20.543
2xk85R1Serine/threonine-protein kinase Nek22.7.11.10.541
2in6839Wee1-like protein kinase2.7.10.20.535
4j521J3Serine/threonine-protein kinase PLK12.7.11.210.533
2owb626Serine/threonine-protein kinase PLK12.7.11.210.530
2rkuR78Serine/threonine-protein kinase PLK12.7.11.210.530
2xk3XK3Serine/threonine-protein kinase Nek22.7.11.10.530
4b6l9ZPSerine/threonine-protein kinase PLK32.7.11.210.524
4a4l939Serine/threonine-protein kinase PLK12.7.11.210.523
2xk4OL2Serine/threonine-protein kinase Nek22.7.11.10.521
2w5aADPSerine/threonine-protein kinase Nek22.7.11.10.518
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.517
3cr0809Wee1-like protein kinase2.7.10.20.516
4fk3325Serine/threonine-protein kinase B-raf2.7.11.10.514
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.510
2xnoED8Serine/threonine-protein kinase Nek22.7.11.10.508
2xk6EQHSerine/threonine-protein kinase Nek22.7.11.10.505
4afeGGYSerine/threonine-protein kinase Nek22.7.11.10.505
2xk730ESerine/threonine-protein kinase Nek22.7.11.10.504
4f1mACPProbable serine/threonine-protein kinase roco42.7.11.10.504
2a19ANPInterferon-induced, double-stranded RNA-activated protein kinase2.7.11.10.500
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.499
3biz61EWee1-like protein kinase2.7.10.20.498
2xnpWCXSerine/threonine-protein kinase Nek22.7.11.10.495
2io6330Wee1-like protein kinase2.7.10.20.491
3h4vNAPPteridine reductase 11.5.1.330.491
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.489
2xnn430Serine/threonine-protein kinase Nek22.7.11.10.488
1x8b824Wee1-like protein kinase2.7.10.20.484
3bi6396Wee1-like protein kinase2.7.10.20.484
4bkz1WSMaternal embryonic leucine zipper kinase2.7.11.10.477
4f1oACPProbable serine/threonine-protein kinase roco42.7.11.10.477
3cqeP91Wee1-like protein kinase2.7.10.20.476
3ctj320Hepatocyte growth factor receptor2.7.10.10.475
4ft0HK9Serine/threonine-protein kinase Chk12.7.11.10.474
2xckMH43-phosphoinositide-dependent protein kinase 12.7.11.10.473
4ftt6HKSerine/threonine-protein kinase Chk12.7.11.10.473
4fex0TOAminoglycoside 3'-phosphotransferase AphA1-IAB/0.470
1c3x8IGPurine nucleoside phosphorylase2.4.2.10.467
2xnmWGZSerine/threonine-protein kinase Nek22.7.11.10.467
2vetUMPThymidylate synthase/0.466
4f0fACPProbable serine/threonine-protein kinase roco42.7.11.10.466
2fb8215Serine/threonine-protein kinase B-raf2.7.11.10.465
2hog710Serine/threonine-protein kinase Chk12.7.11.10.461
2od7A1RNAD-dependent protein deacetylase HST23.5.10.459
4jqeANPCasein kinase II subunit alpha2.7.11.10.456
3c35KAIGlutamate receptor ionotropic, kainate 1/0.453
4f31KAIGlutamate receptor 3/0.452
2xtbKRMAdenosine kinase, putative/0.451
3gc9B45Mitogen-activated protein kinase 112.7.11.240.451
3sqwANPATP-dependent RNA helicase MSS116, mitochondrial3.6.4.130.451
1fw0KAIGlutamate receptor 2/0.450
2hxl422Serine/threonine-protein kinase Chk12.7.11.10.450
1pkfEPDEpothilone C/D epoxidase1.140.448
2pbwDOQGlutamate receptor ionotropic, kainate 1/0.448
2wmqZYQSerine/threonine-protein kinase Chk12.7.11.10.448
2bfaCB3Pteridine reductase 11.5.1.330.447
1xuoLA1Integrin alpha-L/0.446
2xf3J01Uncharacterized protein/0.446
3cgyRDCVirulence sensor histidine kinase PhoQ2.7.13.30.446
3lm1LECAgglutinin alpha chain/0.446
3prfFP3Serine/threonine-protein kinase B-raf2.7.11.10.445
4ftiH7KSerine/threonine-protein kinase Chk12.7.11.10.445
4ug91EWNitric oxide synthase oxygenase1.14.13.1650.445
1ftlDNQGlutamate receptor 2/0.444
2bxoOPBSerum albumin/0.444
2h2qNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.444
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.444
3h4vDVPPteridine reductase 11.5.1.330.443
3l0lHC3Nuclear receptor ROR-gamma/0.443
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.443
2bfpH4BPteridine reductase 11.5.1.330.442
2jav5Z5Serine/threonine-protein kinase Nek22.7.11.10.442
3d5wADPSerine/threonine-protein kinase PLK/0.442
3irxUDRGag-Pol polyprotein2.7.7.490.442
4ea2RWZDehydrosqualene synthase/0.442
4ftq4HKSerine/threonine-protein kinase Chk12.7.11.10.442
1e92HBIPteridine reductase 11.5.1.330.441
1q5dEPBEpothilone C/D epoxidase1.140.441
3p9tTCLRepressor/0.441
4nb6444Nuclear receptor ROR-gamma/0.441
2qqfA1RNAD-dependent protein deacetylase HST23.5.10.440
3b04OOPIsopentenyl-diphosphate delta-isomerase/0.440
4b1rITCTetracycline repressor protein class D/0.440
4ugaH4BNitric oxide synthase oxygenase1.14.13.1650.440