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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xk730ESerine/threonine-protein kinase Nek22.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2xk730ESerine/threonine-protein kinase Nek22.7.11.11.000
4afeGGYSerine/threonine-protein kinase Nek22.7.11.10.626
4a4xJUPSerine/threonine-protein kinase Nek22.7.11.10.582
2xk4OL2Serine/threonine-protein kinase Nek22.7.11.10.579
2xkc4VQSerine/threonine-protein kinase Nek22.7.11.10.569
2xkfBX1Serine/threonine-protein kinase Nek22.7.11.10.514
2xk85R1Serine/threonine-protein kinase Nek22.7.11.10.507
2xnpWCXSerine/threonine-protein kinase Nek22.7.11.10.494
2w5aADPSerine/threonine-protein kinase Nek22.7.11.10.490
2owb626Serine/threonine-protein kinase PLK12.7.11.210.489
2xkdT3MSerine/threonine-protein kinase Nek22.7.11.10.480
2wqoVGKSerine/threonine-protein kinase Nek22.7.11.10.462
2xnmWGZSerine/threonine-protein kinase Nek22.7.11.10.462
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.461
2xnn430Serine/threonine-protein kinase Nek22.7.11.10.460
2xkeWI2Serine/threonine-protein kinase Nek22.7.11.10.459
2z2w770Wee1-like protein kinase2.7.10.20.458
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.458
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.456
1yc2NADNAD-dependent protein deacylase 2/0.453
3ctj320Hepatocyte growth factor receptor2.7.10.10.446
2xk6EQHSerine/threonine-protein kinase Nek22.7.11.10.444
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.444
5k2dZMAAdenosine receptor A2a/0.444
3zbnCOA3-ketoacyl-CoA thiolase-like protein/0.443
4iah1DXAlr2278 protein/0.442
2xnoED8Serine/threonine-protein kinase Nek22.7.11.10.440