sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2xcm	ADP	Cytosolic heat shock protein 90

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2xcm	ADP	Cytosolic heat shock protein 90	/	1.000
2yeg	XQG	Heat shock protein HSP 90-alpha	/	0.496
4bqj	XKL	Heat shock protein HSP 90-alpha	/	0.481
3rlq	3RQ	Heat shock protein HSP 90-alpha	/	0.468
2yef	ANP	Heat shock protein HSP 90-alpha	/	0.465
2qg0	A94	Heat shock protein HSP 90-alpha	/	0.464
4ivg	ANP	TNF receptor-associated protein 1	/	0.464
3t10	ACP	Heat shock protein HSP 90-alpha	/	0.462
3ekr	PY9	Heat shock protein HSP 90-alpha	/	0.460
4ipe	ANP	TNF receptor-associated protein 1	/	0.460
3hyz	42C	Heat shock protein HSP 90-alpha	/	0.456
1osf	KOS	Heat shock protein HSP 90-alpha	/	0.452
3t2s	AGS	Heat shock protein HSP 90-alpha	/	0.447
1qy8	RDI	Endoplasmin	/	0.443
2bz5	AB4	Heat shock protein HSP 90-alpha	/	0.443